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References

  1. Van Den Bossche T, Alexandrov T, Bilbao A, et al. mzPeak: Designing a Scalable, Interoperable, and Future-Ready Mass Spectrometry Data Format. Journal of Proteome Research. 2025;24(11):5329–5335. doi:10.1021/acs.jproteome.5c00435 — the mzPeak white paper; primary reference for the format.

  2. Bradner S. Key words for use in RFCs to Indicate Requirement Levels. BCP 14, RFC 2119; 1997. doi:10.17487/RFC2119 — defines the MUST / SHOULD / MAY requirement levels used throughout this specification (cited above as "(2)").

  3. Martens L, Chambers M, Sturm M, et al. mzML — a Community Standard for Mass Spectrometry Data. Molecular & Cellular Proteomics. 2011;10(1):R110.000133. doi:10.1074/mcp.R110.000133

  4. Teleman J, Dowsey AW, Levander F, et al. Numerical Compression Schemes for Proteomics Mass Spectrometry Data. Molecular & Cellular Proteomics. 2014;13(6):1537–1542. doi:10.1074/mcp.O114.037879 — MS-Numpress.

  5. Schramm T, Hester A, Klinkert I, et al. imzML — A common data format for the flexible exchange and processing of mass spectrometry imaging data. Journal of Proteomics. 2012;75(16):5106–5110. doi:10.1016/j.jprot.2012.07.026

  6. Dai C, Füllgrabe A, Pfeuffer J, et al. A proteomics sample metadata representation for multiomics integration and big data analysis. Nature Communications. 2021;12:5854. doi:10.1038/s41467-021-26111-3 — SDRF-Proteomics.

  7. Apache Software Foundation. Apache Parquet. https://parquet.apache.org/

  8. Apache Software Foundation. Apache Arrow. https://arrow.apache.org/

  9. HUPO-PSI. PSI-MS Controlled Vocabulary. https://github.com/HUPO-PSI/psi-ms-CV